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Selected Publications

Data Dictionaries

  • Sabbir M Rashid, James P McCusker, Paulo Pinheiro, Marcello P Bax, Henrique Santos, Jeanette A Stingone, Amar K Das, Deborah L McGuinness. The Semantic Data Dictionary – An Approach for Describing and Annotating Data. In Data Intelligence, MIT Press pp. 443-486. April 2021 (DOI,PDF).

Repository Infrastructure and Ontology

  • Paulo Pinheiro, Henrique Santos, James Masters, Matthew Johnson, Jeanette A Stingone, Sofia Bengoa, Marcello Bax, Deborah L McGuinness. Knowledge Graph Enabled Scientific Data Repositories. CEUR Workshop Proceedings, Vol.3780, 2024
  • Paulo Pinheiro, Henrique Santos, Zhicheng Liang, Yue Liu, Sabbir Rashid, Deborah McGuinness and Marcello Bax. HADatAc: A Framework for Scientific Data Integration using Ontologies. In Proceedings of the International Semantic Web Conference, Monterey, CA, 2018. (PDF)
  • Paulo Pinheiro, Marcello Bax, Henrique Santos, Sabbir Rashid, Zhicheng Liang, Yue Liu, Jim McCusker, Deborah McGuinness: Annotating Diverse Scientific Data with HAScO. In Proceedings of the Seminar on Ontology Research in Brazil 2018 (ONTOBRAS 2018), São Paulo, SP, Brazil, 2018. (PDF)

Semantic Data Repositories

  • Matthew Johnson, Meenu Ravi, Paulo Pinheiro, Jeanette A. Stingone, Deborah L. McGuinness. A Semi-Automated Approach to Data Harmonization Across Environmental Health Studies. in 32nd Annual Conference of the International Society for Environmental Epidemiology (ISEE). August, 2020.
  • Jeanette Stingone, Paulo Pinheiro, John Meola, Jamie McCusker, Sophia Bengoa, Patricia Kovatch, Deborah McGuinness, Susan Teitelbaum. The CHEAR Data Repository: Facilitating children’s environmental health and exposome research through data harmonization, pooling and accessibility. In Environmental Epidemiology 3, 382, 2019. (URL)
  • Jeanette A. Stingone, Paulo Pinheiro, John Meola, Jamie McCusker, Sophia Bengoa, Patricia Kovatch, Deborha L. McGuinness, Susan L. Teitelbaum. The CHEAR Data Repository: Facilitating children’s environmental health and exposome research through data harmonization, pooling and accessibility. In Annual Meeting for the International Society of Environmental Epidemiology, Utrecht, NL, 2019.
  • Jamie P. McCusker, Sabbir M. Rashid, Zhicheng Liang, Yue Liu, Katherine Chastain, Paulo Pinheiro, Jeanette A. Stingone, Deborah L. McGuinness. Broad, Interdisciplinary Science In Tela: An Exposure and Child Health Ontology. In Proceedings of ACM Web Science 2017, Troy NY, USA, , 349-357, 2017. (PDF)

Repository Applications